| ZKO number |
ZKO617 |
| Recent progress of this line |
F2 generation has been raised
|
|
Gene name |
hdhd1
|
|
Ensembl ID |
ENSDARG00000027826
|
|
Zebrafish strain |
AB
|
|
Cas9 target site 1 sequence |
antisense strand
GGCTGGGGGAGAGAATCTTTtgg
|
|
Cas9 target site 2 sequence |
|
|
Position in the gene |
Exon 3
|
|
Restriction enzyme (RE) |
HinfI (G/ANTC)
|
|
PCR primer (forward) |
5’- CAGATGTAGGGTGATGTAGTGC -3’
|
|
PCR primer (reverse) |
5’- CTGCTTCCATAAAATTATTAGAC -3’
|
|
Length of expected PCR product (bp)
|
419
|
|
Length of expected RE digestion product (bp) |
327 bp +92 bp
|
|
Plasmids used for making Cas9 mRNA |
pXT7-hCAS9
|
| Plasmids?used?for?making?gRNA |
pMD19T-gRNA
|
| Primers?used?for?making?gRNA |
Pr-ZKO 617
|
|
Dosage of injected Cas9 mRNA (ng/ul)
|
300
|
|
Dosage of injected gRNA (ng/ul)
|
50
|
|
Survival rate of F0 embryo @ 1dpf (%)
|
66
|
|
Method to estimate mutation efficiency |
sequencing of PCR product
|
|
Stage of the embryos collected for mutation detection |
http://www.zfish.cn/upload/file/ZKOPDF/ZKO617.pdf
|
|
Mutation efficiency in F0 embryos (%)
|
22
|
Picture?from?F0?embryos
? (gel?picture?or?sequencing?picture) |
|
|
Mutation type
|
Indel
|
|
Germline transmission efficiency in adult F0
|
30
|
|
Wild-type (WT) sequence
|
CCAAAAGATTCTCTCCCCCAGCC
|
Germline mutations in selected F0
(By screening F1 embryos) |
F0-1 |
xxxxxxxxxxxxxxxxxxxxxxx (+0 bp, -23 bp)
|
|
F0-2
|
xxxxxxxxxxxxxxxxxxxxxxG(+0 bp, -22 bp)
|
Mosaicism in selected F0
(By screening F1 adults) |
F0-1
|
AGCCACTCCCTGATACTTTTTTGGTGTGT----------------------------CTAAACAGgtaggatgaagctactca (+0 bp, -28 bp)
|
|
F0-2
|
AGCCACTCCCTGATACTTTTTTGGTGTGTGCCAAAA--TTCTCTCCCCCAGCCAACCCTAAACAGgtaggatgaagctactca (+0bp, -2 bp)
|
|
Allele name and predicted product
|
617a
617b |
AGCCACTCCCTGATACTTTTTTGGTGTGT----------------------------CTAAACAGgtaggatgaagctactca truncated (170 aa)
|
| AGCCACTCCCTGATACTTTTTTGGTGTGTGCCAAAA--TTCTCTCCCCCAGCCAACCCTAAACAGgtaggatgaagctactca truncated (166 aa) |
|
突变创建时间 |
2013-03-23
|
|
填表时间 |
2013/12/23
|
|
修改时间 |
2016/10/24
|
|
PI/负责人 (工作单位) |
|
